Deleting HealthOmics analytics stores - AWS HealthOmics

AWS HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7th, 2025. If you would like to use variant stores or annotation stores, sign up prior to that date. Existing customers can continue to use the service as normal. For more information, see AWS HealthOmics variant store and annotation store availability change.

Deleting HealthOmics analytics stores

When you delete a variant or annotation store, the system also deletes all imported data in that store and any associated tags.

The following example shows how to delete a variant store using the AWS CLI. If the action is successful, the variant store status transitions to DELETING.

aws omics delete-variant-store --id <variant-store-id>

The following example shows how to delete an annotation store. If the action is successful, the annotation store status transitions to DELETING. Annotation stores can't be deleted if more than one version exists.

aws omics delete-annotation-store --id <annotation-store-id>