Package software.amazon.awscdk.cfnpropertymixins.services.omics

Class CfnWorkflowPropsMixin

java.lang.Object
software.amazon.jsii.JsiiObject
software.amazon.awscdk.Mixin
software.amazon.awscdk.cfnpropertymixins.services.omics.CfnWorkflowPropsMixin
All Implemented Interfaces:
software.amazon.jsii.JsiiSerializable, software.constructs.IMixin
@Generated(value="jsii-pacmak/1.127.0 (build 2117ad5)", date="2026-03-11T13:20:02.010Z") @Stability(Stable) public class CfnWorkflowPropsMixin extends Mixin implements software.constructs.IMixin
Creates a private workflow. Before you create a private workflow, you must create and configure these required resources:.

  • Workflow definition file: A workflow definition file written in WDL, Nextflow, or CWL. The workflow definition specifies the inputs and outputs for runs that use the workflow. It also includes specifications for the runs and run tasks for your workflow, including compute and memory requirements. The workflow definition file must be in .zip format. For more information, see Workflow definition files in AWS HealthOmics.
  • You can use Amazon Q CLI to build and validate your workflow definition files in WDL, Nextflow, and CWL. For more information, see Example prompts for Amazon Q CLI and the AWS HealthOmics Agentic generative AI tutorial on GitHub.
  • (Optional) Parameter template file: A parameter template file written in JSON. Create the file to define the run parameters, or AWS HealthOmics generates the parameter template for you. For more information, see Parameter template files for HealthOmics workflows .
  • ECR container images: Create container images for the workflow in a private ECR repository, or synchronize images from a supported upstream registry with your Amazon ECR private repository.
  • (Optional) Sentieon licenses: Request a Sentieon license to use the Sentieon software in private workflows.

For more information, see Creating or updating a private workflow in AWS HealthOmics in the AWS HealthOmics User Guide .

Example: 

 // The code below shows an example of how to instantiate this type.
 // The values are placeholders you should change.
 import software.amazon.awscdk.cfnpropertymixins.services.omics.*;
 import software.amazon.awscdk.*;
 IMergeStrategy mergeStrategy;
 CfnWorkflowPropsMixin cfnWorkflowPropsMixin = CfnWorkflowPropsMixin.Builder.create(CfnWorkflowMixinProps.builder()
         .accelerators("accelerators")
         .containerRegistryMap(ContainerRegistryMapProperty.builder()
                 .imageMappings(List.of(ImageMappingProperty.builder()
                         .destinationImage("destinationImage")
                         .sourceImage("sourceImage")
                         .build()))
                 .registryMappings(List.of(RegistryMappingProperty.builder()
                         .ecrAccountId("ecrAccountId")
                         .ecrRepositoryPrefix("ecrRepositoryPrefix")
                         .upstreamRegistryUrl("upstreamRegistryUrl")
                         .upstreamRepositoryPrefix("upstreamRepositoryPrefix")
                         .build()))
                 .build())
         .containerRegistryMapUri("containerRegistryMapUri")
         .definitionRepository(DefinitionRepositoryProperty.builder()
                 .connectionArn("connectionArn")
                 .excludeFilePatterns(List.of("excludeFilePatterns"))
                 .fullRepositoryId("fullRepositoryId")
                 .sourceReference(SourceReferenceProperty.builder()
                         .type("type")
                         .value("value")
                         .build())
                 .build())
         .definitionUri("definitionUri")
         .description("description")
         .engine("engine")
         .main("main")
         .name("name")
         .parameterTemplate(Map.of(
                 "parameterTemplateKey", WorkflowParameterProperty.builder()
                         .description("description")
                         .optional(false)
                         .build()))
         .parameterTemplatePath("parameterTemplatePath")
         .readmeMarkdown("readmeMarkdown")
         .readmePath("readmePath")
         .readmeUri("readmeUri")
         .storageCapacity(123)
         .storageType("storageType")
         .tags(Map.of(
                 "tagsKey", "tags"))
         .workflowBucketOwnerId("workflowBucketOwnerId")
         .build())
 .strategy(mergeStrategy)
 .build();

See Also:

  • Field Details

    • CFN_PROPERTY_KEYS

      @Stability(Stable) protected static final List<String> CFN_PROPERTY_KEYS

  • Constructor Details

    • CfnWorkflowPropsMixin

      protected CfnWorkflowPropsMixin(software.amazon.jsii.JsiiObjectRef objRef)

    • CfnWorkflowPropsMixin

      protected CfnWorkflowPropsMixin(software.amazon.jsii.JsiiObject.InitializationMode initializationMode)

    • CfnWorkflowPropsMixin

      @Stability(Stable) public CfnWorkflowPropsMixin(@NotNull CfnWorkflowMixinProps props, @Nullable CfnPropertyMixinOptions options)
      Create a mixin to apply properties to AWS::Omics::Workflow.

      Parameters:
      props - L1 properties to apply. This parameter is required.
      options - Mixin options.

    • CfnWorkflowPropsMixin

      @Stability(Stable) public CfnWorkflowPropsMixin(@NotNull CfnWorkflowMixinProps props)
      Create a mixin to apply properties to AWS::Omics::Workflow.

      Parameters:
      props - L1 properties to apply. This parameter is required.

  • Method Details

    • applyTo

      @Stability(Stable) public void applyTo(@NotNull software.constructs.IConstruct construct)
      Apply the mixin properties to the construct.

      Specified by:
      applyTo in interface software.constructs.IMixin
      Specified by:
      applyTo in class Mixin
      Parameters:
      construct - This parameter is required.

    • supports

      @Stability(Stable) @NotNull public Boolean supports(@NotNull software.constructs.IConstruct construct)
      Check if this mixin supports the given construct.

      Specified by:
      supports in interface software.constructs.IMixin
      Overrides:
      supports in class Mixin
      Parameters:
      construct - This parameter is required.

    • getProps

      @Stability(Stable) @NotNull protected CfnWorkflowMixinProps getProps()

    • getStrategy

      @Stability(Stable) @NotNull protected IMergeStrategy getStrategy()