在中激活读取集 HealthOmics

您可以激活使用 start-read-set-activation-job API 操作或通过存档的读取集 AWS CLI，如以下示例所示。将sequence store ID和read set id替换为您的序列存储 ID 和读取集 IDs。

aws omics start-read-set-activation-job 
     --sequence-store-id sequence store ID \
     --sources readSetId=read set ID readSetId=read set id_1 read set id_2        

您会收到一条包含激活任务信息的响应，如下所示。

{
    "id": "12345678",
    "sequenceStoreId": "1234567890",
    "status": "SUBMITTED",
    "creationTime": "2022-10-22T00:50:54.670000+00:00"
}                   

激活作业启动后，您可以使用 get-read-set-activation-job API 操作监控其进度。以下是如何使用 AWS CLI 来检查激活任务状态的示例。将job ID和sequence store ID分别替换为您的序列存储 ID 和作 IDs业。

aws omics get-read-set-activation-job --id job ID --sequence-store-id sequence store ID                    

响应汇总了激活作业，如下所示。

{
    "id": 123567890,
    "sequenceStoreId": 123467890,
    "status": "SUBMITTED",
    "statusUpdateReason": "The job is submitted and will start soon.",
    "creationTime": "2022-10-22T00:50:54.670000+00:00",
    "sources": [
        {
            "readSetId": <reads set id_1>,
            "status": "NOT_STARTED",
            "statusUpdateReason": "The source is queued for the job."
        },
        {
            "readSetId": <read set id_2>,
            "status": "NOT_STARTED",
            "statusUpdateReason": "The source is queued for the job."
        }
    ]
}                    

您可以通过 get-read-set-metadataAPI 操作检查激活任务的状态。可能的状态是ACTIVEACTIVATING、和。ARCHIVED在以下示例中，sequence store ID替换为您的序列存储 ID，然后read set ID替换为您的读取集 ID。

aws omics get-read-set-metadata --sequence-store-id sequence store ID --id read set ID

以下响应显示读取集处于活动状态。

{
    "id": "12345678",
    "arn": "arn:aws:omics:us-west-2:555555555555:sequenceStore/1234567890/readSet/12345678",
    "sequenceStoreId": "0123456789",
    "subjectId": "mySubject",
    "sampleId": "mySample",
    "status": "ACTIVE",
    "name": "HG00100",
    "description": "HG00100 aligned to HG38 BAM",
    "fileType": "BAM",
    "creationTime": "2022-07-13T23:25:20Z",
    "sequenceInformation": {
        "totalReadCount": 1513467,
        "totalBaseCount": 163454436,
        "generatedFrom": "Pulled from SRA",
        "alignment": "ALIGNED"
    },
    "referenceArn": "arn:aws:omics:us-west-2:555555555555:referenceStore/0123456789/reference/0000000001",
    "files": {
        "source1": {
            "totalParts": 2,
            "partSize":  10485760,
            "contentLength": 17112283,
            "s3Access": {
        "s3Uri": "s3://accountID-sequence store ID-ajdpi90jdas90a79fh9a8ja98jdfa9jf98-s3alias/592761533288/sequenceStore/2015356892/readSet/9515444019/import_source1.fastq.gz"
},
         },
        "index": {
            "totalParts": 1,
            "partSize": 53216,
            "contentLength": 10485760
            "s3Access": {
        "s3Uri": "s3://accountID-sequence store ID-ajdpi90jdas90a79fh9a8ja98jdfa9jf98-s3alias/592761533288/sequenceStore/2015356892/readSet/9515444019/import_source1.fastq.gz"
},
        }
    },
    "creationType": "IMPORT",
    "etag": {
        "algorithm": "BAM_MD5up",
        "source1": "d1d65429212d61d115bb19f510d4bd02"
    }
}                     

您可以使用 list-read-set-activation-jobs 查看所有读取集激活作业，如以下示例所示。在以下示例中，sequence store ID替换为您的序列存储 ID。

aws omics list-read-set-activation-jobs --sequence-store-id sequence store ID                

您会收到以下回复。

{
    "activationJobs": [
        {
            "id": 1234657890,
            "sequenceStoreId": "1234567890",
            "status": "COMPLETED",
            "creationTime": "2022-10-22T01:33:38.079000+00:00",
            "completionTime": "2022-10-22T01:34:28.941000+00:00"
        }
    ]
}