Identifying the execution that created patch compliance data
Patch compliance data represents a point-in-time snapshot from the latest successful patching operation. Each compliance report includes both an execution ID and a capture time that help you identify which operation created the compliance data and when it was generated.
If you have multiple types of operations in place to scan your instances for patch compliance, each scan overwrites the patch compliance data of previous scans. As a result, you might end up with unexpected results in your patch compliance data.
For example, suppose you create a patch policy that scans for patch compliance
                    each day at 2 AM local time. That patch policy uses a patch baseline that
                    targets patches with severity marked as Critical,
                        Important, and Moderate. This patch baseline also
                    specifies a few specifically rejected patches. 
Also suppose that you already had a maintenance window set up to scan the same
                    set of managed nodes each day at 4 AM local time, which you don't delete or
                    deactivate. That maintenance window’s task uses a different patch baseline, one
                    that targets only patches with a Critical severity and doesn’t
                    exclude any specific patches. 
When this second scan is performed by the maintenance window, the patch compliance data from the first scan is deleted and replaced with patch compliance from the second scan.
Therefore, we strongly recommend using only one automated method for scanning and installing in your patching operations. If you're setting up patch policies, you should delete or deactivate other methods of scanning for patch compliance. For more information, see the following topics:
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To remove a patching operation task from a maintenance window – Updating or deregistering maintenance window tasks using the console
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To delete a State Manager association – Deleting associations.
 
To deactivate daily patch compliance scans in a Host Management configuration, do the following in Quick Setup:
In the navigation pane, choose Quick Setup.
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Select the Host Management configuration to update.
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Choose Actions, Edit configuration.
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Clear the Scan instances for missing patches daily check box.
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Choose Update.
 
Note
Using the Patch now option to scan a managed node for compliance also results in an overwrite of patch compliance data.