View a markdown version of this page

Uninstall this guidance - Guidance for Multi-Omics and Multi-Modal Data Integration and Analysis on AWS
Using the AWS Management consoleUsing AWS CLI

Uninstall this guidance

You can uninstall Guidance for Multi-Omics and Multi-Modal Data Integration and Analysis on AWS using the AWS Management Console, the AWS Command Line Interface (AWS CLI), or manually.

Note

Uninstalling this guidance deletes the Amazon Simple Storage Service (Amazon S3) buckets and the data in those buckets; AWS CodeCommit repositories and the code in them; the Quick dataset; AWS CodeCommit repositories and the code in them; the AWS Glue jobs, crawlers, triggers, and data; and the Amazon SageMaker AI notebook instance.

Using the AWS Management console

  1. Sign in to the AWS CloudFormation console.

  2. Select your installation stack that was launched first and typically has a name ending in -Setup. All other guidance stacks will be deleted automatically.

  3. Choose Delete.

Using AWS CLI

Determine whether AWS CLI is available in your environment. For installation instructions, see What Is the AWS Command Line Interface in the AWS CLI User Guide. After confirming the AWS CLI is available, run the following command. 

$ aws cloudformation delete-stack --stack-name <installation-stack-name>

Uninstall manually

To manually uninstall this solution, you must delete the related AWS CloudFormation stacks using the following procedure, in the specified order.

  1. Delete all <project-name>-*bucket Amazon S3 bucket contents.

  2. Delete the <project-name>-Quicksight stack.

    Important

    Wait for deletion to complete successfully before proceeding.

  3. Delete the <project-name>-Imaging stack.

    Important

    Wait for deletion to complete successfully before proceeding.

  4. Delete the <project-name>-Omics stack.

    Important

    Wait for deletion to complete successfully before proceeding. If Omics stack deletion fails, manually delete the variants, annotation and reference stores using the Amazon Omics console or API, followed by a re-attempt to delete the Omics stack.

  5. Delete the <project-name>-Genomics stack.

    Important

    Wait for deletion to complete successfully before proceeding.

  6. Delete the <project-name>-Pipeline stack.

    Important

    Wait for deletion to complete successfully before proceeding.

  7. Delete the <project-name>-LandingZone stack.

    Important

    Wait for deletion to complete successfully before proceeding.

  8. Delete the installation stack.

  9. Delete the <project-name> AWS CodeCommit repository.

  10. Delete the <project-name>-Pipe AWS CodeCommit repository.

  11. Cancel your Quick subscription.